Peak integration converts a recorded chromatographic feature into a numerical area. Area percentage then compares that area with a specified total. These are two separate steps, and understanding both makes a reported purity percentage much easier to interpret without confusing detector signal with the mass of material in a vial.
Start with the area above the assigned baseline
Agilent's data-analysis glossary defines area as integrated response above a chromatographic baseline. In practical reading terms, the software needs a region and a reference line before it can assign a numerical area. The peak's height alone does not contain that information.Agilent OpenLab glossary — Area and area percent (opens in a new tab)
For a simple original illustration, imagine a rectangular signal lasting 0.5 minutes, at 12 response units, above a baseline of 2 units. Its baseline-corrected area is (12 − 2) × 0.5 = 5 response-unit minutes. Using zero as the baseline would give 6. The difference comes from the reference line, not from a different sample.
Read how neighbouring features were divided
Agilent's integration documentation distinguishes perpendicular divisions, valley-based baselines and skimming of a small feature on a larger peak. These treatments allocate overlapping signal differently. Their availability in software does not mean that every option is equally suitable for a particular chromatogram.Agilent OpenLab — EZChrom integration events (opens in a new tab)
The same documentation also describes minimum-area thresholds and time intervals with integration disabled. Therefore, a feature visible in a trace need not appear as a separately reported area. Read the processing method and peak table together when reconstructing what entered the result.Agilent OpenLab — EZChrom integration events (opens in a new tab)
A useful review asks why a processing choice represents the signal appropriately and whether it was applied consistently. Manual integration is not inherently proof of an error; an unexplained change of boundaries is also not resolved merely by calling it automatic. The relevant evidence is the documented treatment of the data.
Reconstruct the denominator
For an uncorrected area-normalisation calculation, divide the selected peak's area by the sum of included areas and multiply by 100. Agilent describes area percent on this total-area basis. If a method uses response corrections, grouping or exclusions, preserve those definitions rather than silently applying the simplest formula.Agilent OpenLab glossary — Area and area percent (opens in a new tab)
| Feature | Area units | Share of 10,000 total units |
|---|---|---|
| Assigned target | 9,600 | 96.0% |
| Feature B | 300 | 3.0% |
| Feature C | 100 | 1.0% |
If C were excluded, the included total would become 9,900 and the target would be about 96.97% of that total. This is a denominator demonstration, not a justification for excluding C. Whether an exclusion is appropriate depends on the defined analytical procedure and the feature's role.
Rounding can also affect a displayed sum. Three exact one-third shares become 33.3% each at one decimal place and add to 99.9%. Preserve underlying precision when checking arithmetic before concluding that a missing tenth proves a missing peak.
Keep signal percentage separate from material content
The calculation above normalises recorded areas. Converting it into a mass fraction would require additional assumptions or calibrated response information. Two components need not give the same detector response per unit mass, and components outside the measurement's scope do not acquire an area merely because they are physically present.
For a report-reading note, record the target assignment, integration basis and included total. Then state the result as an area percentage under that method. The separate content guide explains how this relates to milligrams per vial; repeating the percentage beside a vial size does not perform that conversion.
Sources and further detail
- Agilent OpenLab glossary — Area and area percent (opens in a new tab)
Official software definitions. The numerical examples here are original and not exported laboratory results.
- Agilent OpenLab — EZChrom integration events (opens in a new tab)
Official documentation of baseline, division, skimming and threshold controls. Used to explain processing scope, not recommend reprocessing a supplied report.
Sources checked 19 September 2026. Worked examples are illustrative unless a supplied report is explicitly identified. This article has not undergone independent scientific peer review.