How to read a peptide sequence on a specification

Read peptide sequence letters, terminal groups, D/L notation and fragment numbers, with a GHK example and links to the matching product and certificate.

Substantially revised to focus on peptide identity, testing and documentation; related guides consolidated.

Read a peptide sequence from its N-terminus to its C-terminus, keeping any terminal groups and stereochemical labels. The examples below help you compare a specification with the exact structure named on a report.

Decode the letters in GHK

Standard one-letter and three-letter notation
LetterResidue notationName
GGlyGlycine
HHisHistidine
KLysLysine
IUPAC sequence notation (opens in a new tab)

GHK reads Gly–His–Lys in that order. The supplied GHK-Cu report describes GHK as part of a copper(II) complex, so GHK-Cu and the uncomplexed peptide should retain their different material descriptions.IUPAC sequence notation (opens in a new tab)GHK-Cu report (PDF) (opens in a new tab)

Keep terminal groups visible

Examples of structural notation
NotationWhat it records
Ac- at a specified N-terminusA covalently attached acetyl group
-OH at the C-terminusA terminal carboxyl form
-NH2 at the C-terminusA terminal amide
Bracketed residue or positionRead the author’s definition of the change and its location
IUPAC–IUB — Substituted amino-acid notation (opens in a new tab)

The terminal residue and its terminal group are separate details. Acetylation is also different from an acetate counterion. Do not add a terminal group that the source leaves unspecified, and do not read a side-chain amide as a C-terminal amide.IUPAC–IUB — Substituted amino-acid notation (opens in a new tab)Bachem — Frequently asked questions (opens in a new tab)

Compare variants and fragments precisely

D-Ala and L-Ala specify different configurations; D/L is separate from the direction in which the sequence is written. To compare an analogue with a reference sequence, record each changed residue, its position and any terminal modification.IUPAC Blue Book — Amino acids and peptides (opens in a new tab)IUPAC sequence notation (opens in a new tab)

For an illustrative fragment numbered 7–10 inclusive, the length is 10 − 7 + 1 = 4 residues. Retain the reference sequence and whether numbering starts from a precursor or a shorter mature chain: the same printed numbers can otherwise refer to different boundaries.IUPAC sequence notation (opens in a new tab)UniProt — Chain annotation (opens in a new tab)

Reading notation establishes what the specification says. Matching a tested sample to that description is an analytical question; an abbreviation alone does not establish every structural detail.Bachem analytical guide (opens in a new tab)

Sources and further detail

  1. IUPAC–IUB — One-letter amino-acid notation (opens in a new tab)

    Nomenclature recommendations, sections 3AA-20 and 3AA-21; symbols, direction and ambiguous residues.

  2. IUPAC–IUB — Substituted amino-acid notation (opens in a new tab)

    Section 3AA-17: terminal and side-chain notation, with explicit distinctions between hyphens and parentheses.

  3. Bachem — Frequently asked questions (opens in a new tab)

    Salt-form explanation. Bachem's stated supply defaults describe Bachem, not every peptide supplier.

  4. IUPAC Blue Book — Amino acids and peptides (opens in a new tab)

    Sections P-103.1.3 and P-103.3: stereodescriptors and peptide representation. Cysteine prevents a universal L = S shortcut.

  5. Supplied GHK-Cu 50 mg certificate (opens in a new tab)

    MA-GHK-0001, revision 01; task URDL5Q2; lot GHK-01-5Q2. Source of the complex, content and ratio examples. The cited PDF was re-read on 3 October 2026 to check this transcription; its issuer and findings were not independently authenticated.

  6. Bachem — Quality control of amino acids and peptides (opens in a new tab)

    Sections on identity, purity and product content. Used for the distinction between chromatographic area and material content.

  7. UniProt — Chain annotation (opens in a new tab)

    Describes mature chains following processing and multiple chains arising from one precursor.

Revised from the existing source dossier on 3 October 2026. Supplied-report values are document transcriptions, not independent authentication or new measurements. Source notes identify the scope of each reference; this article has not undergone independent scientific peer review.

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